C. Anastasiadi, M. Tsifintaris, M. Sitmalidis, E. Karamichali, K. Spyridopoulou, M. Patoulioti, M. Georganta, P. Tsikouras, N. Nikolettos, M. Lithoxopoulou, C. Tsakalidis, K. Chlichlia, G. Baltatzis, M. Samiotaki, R. Sandaltzopoulos, and A. Giannakakis (2025). EV-associated lncRNA NORAD and Protein Biomarkers in Human Milk Predict Unexplained Prematurity. In preparation.

V. Gouzouasis, I. Sarrigeorgiou, M. Tsifintaris, N. Markoglou, U. Georgopoulou, P. Lymberi, M. Anagnostouli, L. Probert, A. Giannakakis (2025). Double-stranded RNA Antiviral Signature in Early Multiple Sclerosis. Frontiers in Microbiology - Virology (Ιn press)  IF: 4.5

D. Grigoriadis, M. Tsifintaris, A. Giannakakis, GA Pavlopoulos and N. Perdikopanis (2025). Public Omics Explorer (POE): Enabling integrative semantic search across GEO omics datasets based on PubMed publications.  Comput Struct Biotechnol J. (In press) IF: 4.1

M. Tsifintaris, D. Grigoriadis, M. Sitmalidis, P. Repanas, E. Lazarashvili, C. Anastasiadi, I. Kavakiotis, R. Sandaltzpoulos, GA Pavlopoulos and A Giannakakis (2025). ASTRA: A Comprehensive Resource of Stress-induced Transcriptional Activity in Human Cell Lines. Νucleic Acid Research, Database issue gkaf1174, https://doi.org/10.1093/nar/gkaf1174 IF: 13.1

FA Baltoumas, E. Karatzas, NK Venetsianou, E. Aplakidou, K. Giatras, MN. Chasapi, IN. Chasapi, I. Iliopoulos, VA Iconomidou, IP. Trougakos, F. Psomopoulos, A. Giannakakis, I. Georgakopoulos-Soares, P. Kontou, PG. Bagos and GA Pavlopoulos (2025). Computational and Structural Biotechnology Journal, Volume 27, Pages 2626-2637, ISSN 2001-0370, https://doi.org/10.1016/j.csbj.2025.06.025 IF: 4.1

V. Gouzouasis, M. Tsifintaris, S. Tastsoglou, N. Markoglou, D. Karathanasis, L. Dimitrakopoulou, A. Dagkonaki, E. Korakidis, G. Mpekoulis, N. Vassilaki, AG Hatzigeorgiou, M. Anagnostouli, ME Evangelopoulos, A. Giannakakis and  L. Probert (2025). Journal of Neuroimmunology, Volume 409, 578758, ISSN 0165-5728, https://doi.org/10.1016/j.jneuroim.2025.578758 IF: 2.5

G. I Gavriilidis, V. Vasileiou, S. Dimitsaki, G. Karakatsoulis, A. Giannakakis, G. A Pavlopoulos and F. Psomopoulos (2025). APNet, an explainable sparse deep learning model to discover differentially active drivers of severe COVID-19. Bioinformatics, vol. 41, pp. btaf063. DOI: doi.org/10.1093/bioinformatics/btaf063. IF: 4.42024;13(8):563.

D-sORF: Accurate Ab Initio Classification of Experimentally Detected Small Open Reading Frames (sORFs) Associated with Translational Machinery (2024). N. Perdikopanis, A. Giannakakis, I. Kavakiotis and A.G. Hatzigeorgiou. Biology, vol 13. pp. 563.DOI: doi.org/10.3390/biology13080563. IF: 3.6

M. Tsifintaris, M. Sitmalidis, M. Tokamani, C. Anastasiadi, M. Georganta, I. Tsochantaridis, D. Vlachakis, P. Tsikouras, N. Nikolettos, G. P Chrousos, R. Sandaltzopoulos and A. Giannakakis (2024). Analysis of Human Milk Microbiota in Northern Greece by Comparative 16S rRNA Sequencing vs. Local Dairy Animals. Nutrients, vol. 16, pp. 2175. DOI: doi.org/10.3390/nu16142175. IF: 4.8

A. Giannakakis, M. Tsifintaris, V. Gouzouasis, G. S. Ow, M. Y. Aau, C. Papp, A. V Ivshina and V. A Kuznetsov (2024). KDM7A-DT induces genotoxic stress, tumorigenesis, and progression of p53 missense mutation-associated invasive breast cancer. Frontiers in Oncology, vol. 14, pp. 1227151. DOI: 10.3389/fonc.2024.1227151. IF: 3.5

Chronopoulou, I. Tsochantaridis, M. Tokamani, K. D. Kokkinopliti, P. Tsomakidis, A. Giannakakis, A. Galanis, A. Pappa and R. Sandaltzopoulos (2023) Expression and purification of human interferon alpha 2a (IFNα2a) in the methylotrophic yeast Pichia pastoris. S. Protein Expression and Purification, vol. 211, pp. 106339. DOI: doi.org/10.1016/j.pep.2023.106339. IF: 1.4

M. Tokamani, E. Figgou, L. Papamichail, E. Sakka, A. Toros, A. Bouchorikou, A. Giannakakis, E. I. Matthaiou and R. Sandaltzopoulos (2021). A Multiplex PCR Melting-Curve-Analysis-Based Detection Method for the Discrimination of Five Aspergillus Species. Journal of Fungi, vol.9 pp. 842. DOI:doi.org/10.3390/jof9080842. IF: 4.5

N. Mourtzi, T. Siahanidou, M. Tsifintaris, E. Karamichali, A. Tasiopoulou, A. Sertedaki, M. Pesmatzoglou, A. Kapetanaki, G. Liosis, G. Baltatzis, D. Vlachakis, G. Chrousos, and A. Giannakakis (2021). LncRNA NORAD is consistently detected in breastmilk exosomes and downregulated in mothers of preterm infants. Int J Mol Med 48: 216, 2021 DOI: 10.3892/ijmm.2021.5049. IF: 5.7

A. Giannakakis, J. Zhang, P. Jenjaroenpun, S. Nama, N. Zainolabidin, M. Y. Aau, A. A. Yarmishyn, C. Vaz, A. V. Ivshina, O. V. Grinchuk, M. Voorhoeve, L. A. Vardy, P. Sampath, V. A. Kuznetsov, I. V. Kurochkin, and E. Guccione (2015). Contrasting expression patterns of coding and noncoding parts of the human genome upon oxidative stress. Sci. Rep., pp. 1–16. DOI: 10.1038/srep09737. IF: 3.8

A. Giannakakis, R. Sandaltzopoulos, J. Greshock, S. Liang, J. Huang, K. Hasegawa, C. Li, A. O'Brien-Jenkins, D. Katsaros, B. L. Weber, C. Simon, G. Coukos, and L. Zhang (2008). miR-210 links hypoxia with cell cycle regulation and is deleted in human epithelial ovarian cancer.,” Cancer Biol. Ther., vol. 7, no. 2, pp. 255–264. DOI: 10.4161/cbt.7.2.5297. IF: 4.4